PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_14328
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TCP
Protein Properties Length: 324aa    MW: 35144.9 Da    PI: 7.2557
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_14328genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP117.81.4e-3635136389
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............. 88 
                 g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++++ ++s++ + s+++++  ++ +             
  PEQU_14328  35 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKNAKAAIDELSELPAWHPSSVHEISNKKQTPPNELAssaafsfgasnva 133
                 89*************************************************************888886664444444444333332222223333333 PP

         TCP  89 ..k 89 
                   +
  PEQU_14328 134 ssS 136
                 330 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.6E-3235144IPR005333Transcription factor, TCP
PROSITE profilePS5136934.0863694IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRSGGGEIVE VQGGHIVRSI GRKDRPSKDI VRSIGRKDRH SKVCTAKGPR DRRVRLSAHT  60
AIQFYDVQDR LGYDRPSKAV DWLIKNAKAA IDELSELPAW HPSSVHEISN KKQTPPNELA  120
SSAAFSFGAS NVASSSFLPL SLDSDSIADT IKSFFPANSA AAVHEDSNKV HHFQDLRLSL  180
QSIQDPTFDH PNPIQHHHFS FDTGSTGFAD QNQRMVSWNA AAGGSEGGSG VYAFNVPPVL  240
LGQGQLSTQR GPLQSSNSSL LRPWMEPIDQ QMQQGLIPEV SSVGYSSGSR SFSGFRFPAG  300
IHAQDVLDDG ISEKPSSDSS ASHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ4396040.0HQ439604.1 Phalaenopsis hybrid cultivar candidate developmental transcription factor TCP2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008783922.12e-96PREDICTED: transcription factor PCF5-like
RefseqXP_008783923.12e-96PREDICTED: transcription factor PCF5-like
RefseqXP_008783924.12e-96PREDICTED: transcription factor PCF5-like
RefseqXP_008783925.12e-96PREDICTED: transcription factor PCF5-like
SwissprotQ8LPR52e-71TCP4_ARATH; Transcription factor TCP4
TrEMBLF5ANW20.0F5ANW2_9ASPA; Candidate developmental transcription factor TCP2 (Fragment)
STRINGGSMUA_Achr5P06660_0017e-88(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58393355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-55TCP family protein